Commits · master · violethaze74 / Artemis

20 Nov, 2021 1 commit
- Merge branch 'dependabot/maven/junit-junit-4.13.1' into 'master' · 53c43ffb
  violethaze74 authored Nov 20, 2021
```
Bump junit from 4.12 to 4.13.1

See merge request !1
```
  53c43ffb
10 Oct, 2021 1 commit

Bump junit from 4.12 to 4.13.1 · 93553d23

dependabot[bot] authored Oct 10, 2021

Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1.
- [Release notes](https://github.com/junit-team/junit4/releases)
- [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.12.md)
- [Commits](https://github.com/junit-team/junit4/compare/r4.12...r4.13.1

)

---
updated-dependencies:
- dependency-name: junit:junit
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>

93553d23

09 Sep, 2020 2 commits
- Merge pull request #314 from sanger-pathogens/fixlinks · 52560242
  Christoph Püthe authored Sep 09, 2020
```
correct links to user manuals
```
  52560242
- correct links to user manuals · a39fb6ab
  puethe authored Sep 09, 2020
  
  a39fb6ab
07 Feb, 2020 1 commit
- Merge pull request #304 from mr-c/samreader · 0f8b905a
  kpepper authored Feb 07, 2020
```
Implement new htsjdk API
```
  0f8b905a
06 Feb, 2020 1 commit
- Implement new htsjdk API · e1310287
  Sascha Steinbiss authored Feb 06, 2020
  
  e1310287
04 Dec, 2019 1 commit
- Updated CHANGELOG · 9153ee34
  “kpepper” authored Dec 04, 2019
  
  9153ee34
28 Nov, 2019 1 commit
- Merge pull request #300 from kpepper/perf_fixes · 5a2454bb
  kpepper authored Nov 28, 2019
```
Various fixes
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  5a2454bb
21 Nov, 2019 8 commits
- Updated in line with test data changes · 993d8c94
  “kpepper” authored Nov 21, 2019
  
  993d8c94
- Bug fixes for indexed gff handling · c947be59
  “kpepper” authored Nov 21, 2019
  
  c947be59
- Changed to load database mappings up front · 642ff907
  “kpepper” authored Nov 21, 2019
  
  642ff907
- Added NullPointer catch for missing ID · 58786ab0
  “kpepper” authored Nov 21, 2019
  
  58786ab0
- Code tidy-up · 1d5b7c38
  “kpepper” authored Nov 21, 2019
  
  1d5b7c38
- Test data rejig · d782dbf8
  “kpepper” authored Nov 21, 2019
  
  d782dbf8
- Added GeneUtils entry · 68981aa7
  “kpepper” authored Nov 21, 2019
  
  68981aa7
- Added low_complexity_region and tandem_repeat feature keys · 716e5f26
  “kpepper” authored Nov 21, 2019
  
  716e5f26
19 Nov, 2019 3 commits
- Merge pull request #298 from sanger-pathogens/change_script_exit_codes · 6debf112
  kpepper authored Nov 19, 2019
```
Addition to PR297: Changed exit codes for art and dnaplotter help
```
  6debf112
- Changed exit codes for art and dnaplotter help, to be consistent with PR #297 and issue #296. · 4e719e3f
  “kpepper” authored Nov 19, 2019
  
  4e719e3f
- Merge pull request #297 from Darkless012/patch-1 · 2b3313bc
  kpepper authored Nov 19, 2019
```
Change exit code to 0 on running act -help
```
  2b3313bc
13 Nov, 2019 1 commit
- Change exit code to 0 on running act -help · f30d0cfe
  Pavel Grochal authored Nov 13, 2019
```
fixes #296
```
  f30d0cfe
25 Oct, 2019 1 commit
- Updated release download badge version number · 465e43b9
  “kpepper” authored Oct 25, 2019
  
  465e43b9
17 Oct, 2019 1 commit
- Code tidy ups and unit tests · 47a3f0c1
  “kpepper” authored Oct 17, 2019
  
  47a3f0c1
11 Oct, 2019 1 commit
- Refactored LineGroupCache · 0d36c6ab
  “kpepper” authored Oct 11, 2019
  
  0d36c6ab
10 Oct, 2019 1 commit
- Changed max number of lines that can be displayed in the log window so that it doesn't hang · 95543320
  “kpepper” authored Oct 10, 2019
  
  95543320
09 Oct, 2019 5 commits
- Minor change to stop validation aborting when a NullPointer is encountered · 4e66db21
  “kpepper” authored Oct 09, 2019
  
  4e66db21
- Added additional file suffixes to the feature_file_suffixes and sequence_file_suffixes properties · 58edbefe
  “kpepper” authored Oct 09, 2019
  
  58edbefe
- Merge latest master branch changes into perf_fixes · 5e9c79e3
  “kpepper” authored Oct 09, 2019
  
  5e9c79e3
- Merge pull request #5 from sanger-pathogens/master · 9ea83332
  kpepper authored Oct 09, 2019
```
Pull latest master updates to local repo
```
  9ea83332
- Fixed removal of redundant delimiters · 9faeb893
  “kpepper” authored Oct 09, 2019
  
  9faeb893
07 Aug, 2019 4 commits
- Updated for release v18.0.3 · 21ae865a
  “kpepper” authored Aug 07, 2019
  
  21ae865a
- Merge pull request #294 from sanger-pathogens/docker_branch · 66317a61
  kpepper authored Aug 07, 2019
```
Add a docker file, build and documentation updates. Fix for issue 293.
```
  66317a61
- Rebuilt Mac appbundler jar from latest GitHub code to fix Mojave issue whereby... · 42555c9c
  “kpepper” authored Aug 07, 2019
```
Rebuilt Mac appbundler jar from latest GitHub code to fix Mojave issue whereby a Java version error would be displayed when trying to open an app
```
  42555c9c
- Bumped version number to 18.0.3 · a3eeff3a
  “kpepper” authored Aug 07, 2019
  
  a3eeff3a
06 Aug, 2019 2 commits
- Updated usage section · 45442d33
  “kpepper” authored Aug 06, 2019
  
  45442d33
- Updated Java advice · 99fcb1be
  “kpepper” authored Aug 06, 2019
  
  99fcb1be
05 Aug, 2019 3 commits
- Classpath change to docker file · 60daed27
  “kpepper” authored Aug 05, 2019
  
  60daed27
- Minor changes · 454f9e1b
  “kpepper” authored Aug 05, 2019
  
  454f9e1b
- Docker related updates · 907369c1
  “kpepper” authored Aug 05, 2019
  
  907369c1
01 Aug, 2019 2 commits
- Changed build java version · 7d8d8d0d
  “kpepper” authored Aug 01, 2019
  
  7d8d8d0d
- Changed Maven Enforcer plugin version · 678af9ed
  “kpepper” authored Aug 01, 2019
  
  678af9ed